DDBJ/EMBL/GenBank Accession的命名规则

2024-07-07 10:16| 来源: 网络整理| 查看: 265

The format for GenBank Accession numbers are:

GenBank Accession numbers命名的规则是:

Nucleotide:1 letter + 5 numerals OR 2 letters + 6 numerals 1个字母+5个数字或 2个字母+6位数字Protein:3 letters + 5 numerals 3个字母+5位数字WGS:4 letters + 2 numerals for WGS assembly version + 6-8 numerals 4个字母+2位数字+WGS的版本+6-8位数字MGA:5 letters + 7 numerals 5个字母+7位数字

Accession号前缀在各个数据库的分布：

Nucleotide Accession Prefixes （核酸序列的前缀）

PrefixDatabaseTypeBA,DF,DGDDBJCON divisionANEMBLCON divisionCH,CM,DS,EM, EN,EP,EQ,FA, GG,GLNCBICON divisionC,AT,AU,AV,BB, BJ,BP,BW,BY,CI, CJ,DA,DB,DC, DK,FSDDBJESTFEMBLESTH,N,T,R,W,AA,AI, AW,BE,BF,BG, BI,BM,BQ,BU, CA,CB,CD,CF, CK,CN,CO,CV, CX,DN,DR,DT, DV,DY,EB,EC, EE,EG,EH,EL, ES,EV,EW,EX, EY,FC,FD,FE, FF,FG,FK,FL, GD,GE,GH,GOGenBankESTD,ABDDBJDirect submissionsV,X,Y,Z,AJ,AM, FMEMBLDirect submissionsU,AF,AY,DQ,EF, EU,FJ,GQGenBankDirect submissionsAPDDBJGenome project dataBSDDBJChimpanzee genome dataAL,BX,CR,CT, CUEMBLGenome project dataAE,CP,CYGenBankGenome project dataAG,DE,DH,FTDDBJGSSB,AQ,AZ,BH,BZ, CC,CE,CG,CL, CW,CZ,DU,DX, ED,EI,EJ,EK, ER,ET,FH,FIGenBankGSSAKDDBJcDNA projectsAC,DPGenBankHTGSE,BD,DD,DI,DJ, DL,DM,FUDDBJPatentsA,AX,CQ,CS,FB, GM,GNEMBLPatents (nucleotide only)I,AR,DZ,EA,GC, GPGenBankPatents (nucleotide)G,BV,GFGenBankSTSBRDDBJTPABNEMBLTPAEZGenBankTSASGenBankFrom journal scanningADGenBankFrom GSDBAHGenBankSegmented set headerASGenBankOther - not currently being usedBCGenBankMGC projectBKGenBankTPABL,GJ,GKGenBankTPA CON divisionBTGenBankFLI-cDNA projectsJ,K,L,MGenBankfrom GSDB direct submissionsNGenBank and DDBJN0-N2 were used intially by both groups but have been removed from circulation, N2-N9 are ESTsAAAA-AZZZGenBankWGSBAAA-BZZZDDBJWGSCAAA-CZZZEMBLWGSDAAA-DZZZGenBankWGS TPAAAAAA-AZZZZDDBJMGAProtein Accession Prefixes （蛋白序列的前缀）PrefixDatabaseTypeBAA-BZZDDBJProtein IDCAA-CZZEMBLProtein IDAAA-AZZGenBankProtein IDAAEGenBankProtein ID for Patents (note that there are also some patent proteins with AAA and AACFAA_FZZDDBJTPA Protein IDDAA-DZZGenBankTPA Protein IDGAA-GZZDDBJWGS Protein IDEAA-EZZGenBankWGS Protein IDHAA-HZZGenBankTPA WGS Protein IDOSwiss-ProtProteinPSwiss-Prot (Geneva)ProteinQSwiss-Prot (Hinxton)Protein

NCBI RefSeq命名格式的详细说明:https://www.plob.org/2012/02/24/3711.html

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