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2023-11-27 22:41| 来源: 网络整理| 查看: 265

DOI: 10.18129/B9.bioc.XVector Foundation of external vector representation and manipulation in Bioconductor

Bioconductor version: Release (3.18)

Provides memory efficient S4 classes for storing sequences "externally" (e.g. behind an R external pointer, or on disk).

Author: Herv茅 Pag猫s and Patrick Aboyoun

Maintainer: Herv茅 Pag猫s

Citation (from within R, enter citation("XVector")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("XVector")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation PDF Reference Manual Details biocViews DataRepresentation, Infrastructure, Software Version 0.42.0 In Bioconductor since BioC 2.13 (R-3.0) (10 years) License Artistic-2.0 Depends R (>= 4.0.0), methods, BiocGenerics(>= 0.37.0), S4Vectors(>= 0.27.12), IRanges(>= 2.23.9) Imports methods, utils, tools, zlibbioc, BiocGenerics, S4Vectors, IRanges LinkingTo S4Vectors, IRanges Suggests Biostrings, drosophila2probe, RUnit SystemRequirements Enhances URL https://bioconductor.org/packages/XVector BugReports https://github.com/Bioconductor/XVector/issues Depends On Me Biostrings, triplex Imports Me BSgenome, ChIPsim, CNEr, compEpiTools, crisprScore, CRISPRseek, dada2, DECIPHER, gcrma, GenomicFeatures, GenomicRanges, Gviz, HiLDA, IONiseR, IsoformSwitchAnalyzeR, kebabs, MatrixRider, Modstrings, monaLisa, ProteoDisco, R453Plus1Toolbox, ribosomeProfilingQC, Rsamtools, rtracklayer, SparseArray, Structstrings, TFBSTools, tracktables, tRNA, tRNAscanImport, VariantAnnotation Suggests Me IRanges, musicatk Links To Me Biostrings, CNEr, DECIPHER, kebabs, MatrixRider, Rsamtools, rtracklayer, ShortRead, SparseArray, triplex, VariantAnnotation, VariantFiltering Build Report Package Archives

Follow Installation instructions to use this package in your R session.

Source Package XVector_0.42.0.tar.gz Windows Binary XVector_0.42.0.zip macOS Binary (x86_64) XVector_0.42.0.tgz macOS Binary (arm64) XVector_0.42.0.tgz Source Repository git clone https://git.bioconductor.org/packages/XVector Source Repository (Developer Access) git clone [email protected]:packages/XVector Bioc Package Browser https://code.bioconductor.org/browse/XVector/ Package Short Url https://bioconductor.org/packages/XVector/ Package Downloads Report Download Stats Old Source Packages for BioC 3.18 Source Archive

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