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问题描述
I've been trying to set up my R using conda (eventually to use with Beaker Notebook) and I want to be able to use RStudio with my conda-installed version of R. My method of installing R: conda install -c r r conda install -c r r-essentials conda install -c r r-rserve conda install -c r r-devtools conda install -c r r-rcurl conda install -c r r-RJSONIO conda install -c r r-jpeg conda install -c r r-png conda install -c r r-roxygen2 conda install --channel https://conda.anaconda.org/bioconda bioconductor-edgerI ran that version of R (I only installed this version) > version _ platform x86_64-apple-darwin11.0.0 arch x86_64 os darwin11.0.0 system x86_64, darwin11.0.0 status major 3 minor 3.1 year 2016 month 06 day 21 svn rev 70800 language R version.string R version 3.3.1 (2016-06-21) nickname Bug in Your HairRunning R in Jupyter is kind of buggy. For example, when it outputs errors, it outputs to stdout and splits every character in the string with a linebreak. I want to use RStudio but I don't want to install another version of R. How can I route my conda version of R into RStudio? Here's my .bash_profile not sure if this will be useful: $ cat ~/.bash_profile # added by Anaconda3 4.0.0 installer export PATH="/Users/jespinoz/anaconda/bin:$PATH" export RSTUDIO_WHICH_R=/Users/jespinoz/anaconda/bin/RI've been trying to follow these tutorials but I am lost. I'm really not too familiar with environment variables and such things. (1) https://support.rstudio.com/hc/en-us/community/posts/207830688-Using-RStudio-with-conda (2) Launch mac eclipse with environment variables set when I looked for my R it directed me to: $ which R /Users/jespinoz/anaconda/bin/Rbut the directions from (1) is using this path which is very confusing: /Users/jespinoz/anaconda/lib/R/bin/RI tried doing what this guy did and added this to my .bash_profile but it didn't work. I even made a .bashrc but it still didn't work (I sourced both after I added the lines) export RSTUDIO_WHICH_R=/Users/jespinoz/anaconda/bin/R How to tell RStudio to use R version from Anaconda Unfortunately, anaconda has no tutorial for this in https://docs.continuum.io/anaconda/ide_integration 推荐答案So long as which R shows up a working R interpreter (which it should do if you have installed the r package from conda and activated your environment) then launching rstudio from that same environment should pick it up just fine. For a test, on ArchLinux, I built and installed: https://aur.archlinux.org/packages/rstudio-desktop-git/ .. then force removed the R interpreter (pacman -Rdd r), then installed r from conda (conda install -c r r) and it worked fine. I then closed my terminal and opened a new one (so that the correct conda environment was not activated and successfully launched RStudio with the following command: RSTUDIO_WHICH_R=/home/ray/r_3_3_1-x64-3.5/bin/R rstudio I think the crux is to launch RStudio from the right environment? Your ~/.bash_profile and ~/.bashrc are only sourced when you run bash. For environment variables to be set so that the your desktop environment knows about them, on Linux, you should put them in ~/.profile or else in /etc/pam.d (you may need to logout or shutdown after making those changes) and on OS X, you should check out https://apple.stackexchange.com/q/57385 其他推荐答案See https://anaconda.org/r/rstudio: $ conda install -c r rstudioThen from command line: $ rstudio(It is how I installed it and it works.) 其他推荐答案Update: ADD THIS TO ~/.bash_profile ! export RSTUDIO_WHICH_R="/Users/jespinoz/anaconda/bin/R" launchctl setenv RSTUDIO_WHICH_R $RSTUDIO_WHICH_RCredits to @Z-Shiyi for the last line https://github.com/conda/conda/issues/3316#issuecomment-241246755 An addition to what @Ray Donnelly said above. Basically, it has to be executed from the correct environment (i.e. run it from the terminal). You can either: (A) Put this in your ~/.bash_profile export RSTUDIO_WHICH_R=/Users/[yourusername]/anaconda/bin/R (if youre using conda but you could put any R path) (B) then type this in the terminal after it's been sourced (either restart terminal or do source .bash_profile): open -a RStudio That should work. or you can do what I did: (A) open up automator (sorry if you're not on a mac; this will only work on mac) (B) use a Run Shell Script (C) then delete cat that's already in there and put in: export RSTUDIO_WHICH_R=/Users/[yourusername]/anaconda/bin/R open -a RStudio (D) Save it as something like run_rstudio.app then just run that and it should work:
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